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    "source": "research/structures/nnc2215-b29-linker-roof-product.smi",
    "source_map_id": 37
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 ],
 "inputs": {
  "audits": {
   "b1_topology": {
    "path": "research/data/nnc2215-b1-topology-audit.json",
    "sha256": "4ee0feac680641f60b465f343837923488877bf04ea03e927f62efad707e79ce"
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   "b29_topology": {
    "path": "research/data/nnc2215-b29-topology-audit.json",
    "sha256": "edd4d9911170e3688c80f6b8ca3f4339ebee7815c1bb596cfa2dfaca468d96c6"
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   "boundary_audit": {
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    "sha256": "0003fde2504cf31bb6513d4dd3f7db4834a7493910836bedd00cf769d7959349"
   },
   "charge_ledger": {
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    "sha256": "1e29676bf7fb08f5d33a7d28194664d66221748467c747ed2924fcf6dc2f3a64"
   },
   "hybrid_audit": {
    "path": "research/data/nnc2215-hybrid-feasibility.json",
    "sha256": "51bc4308aa7c6518abf372b0fdb87dee0ac4a46f54d7bf27946668897f31d65e"
   },
   "reconciliation": {
    "path": "research/data/nnc2215-carbon-reconciliation-candidate.json",
    "sha256": "7aed13e3d8bcd13d9aa8b3e468f8831b5dec322caf3de454dd67f68087d4e133"
   }
  },
  "full_graph": {
   "heavy_atom_count": 507,
   "heavy_bond_count": 527,
   "path": "research/data/nnc2215-full-conjugate-graph.json",
   "sha256": "fb9feaed3537196515c62656d890c0e92b42c9b7da15955dd516b1d82dd178dc"
  },
  "hash_checks": [
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    "path": "research/data/nnc2215-full-conjugate-graph.json",
    "sha256": "fb9feaed3537196515c62656d890c0e92b42c9b7da15955dd516b1d82dd178dc",
    "status": "pass"
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   {
    "path": "research/data/nnc2215-attachment-boundary-audit.json",
    "sha256": "0003fde2504cf31bb6513d4dd3f7db4834a7493910836bedd00cf769d7959349",
    "status": "pass"
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   {
    "path": "research/data/nnc2215-b1-glucoside-atom-map.json",
    "sha256": "a45953599aa2eb490275da3cfe595a3b702148da690a6baf17c6751925878e81",
    "status": "pass"
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    "status": "pass"
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   {
    "path": "research/data/nnc2215-b29-linker-roof-product-map.json",
    "sha256": "eb028433748cf294744ac02f381e909f029f79916484a2e05dfbf966f7faa0c5",
    "status": "pass"
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    "path": "research/data/nnc2215-b29-topology-audit.json",
    "sha256": "edd4d9911170e3688c80f6b8ca3f4339ebee7815c1bb596cfa2dfaca468d96c6",
    "status": "pass"
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   {
    "path": "research/data/nnc2215-carbon-reconciliation-candidate.json",
    "sha256": "7aed13e3d8bcd13d9aa8b3e468f8831b5dec322caf3de454dd67f68087d4e133",
    "status": "pass"
   },
   {
    "path": "research/data/nnc2215-model-formula-audit.json",
    "sha256": "ad5cf3035fa16330239f69ef7fee95e0a2c02b6944d309f20e56219799775260",
    "status": "pass"
   },
   {
    "path": "research/structures/nnc2215-b1-glucoside-attachment.smi",
    "sha256": "94ef8ea011bc968beb3fb4a3e8846b64182c602faf7fe041461cd33c4e5a02b4",
    "status": "pass"
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   {
    "path": "research/structures/nnc2215-b29-linker-roof-product.smi",
    "sha256": "b677316c1fced61045d2eebab4de85cdb2f1ef956280d18ab9d610df1181bd40",
    "status": "pass"
   },
   {
    "path": "research/structures/nnc2215-closed-model.pdb",
    "sha256": "a8287b859e73b274e8403ee56cd83564bc30fd0503d852829fa805fdc777e12d",
    "status": "pass"
   },
   {
    "path": "research/structures/nnc2215-closed-source-corrected-candidate.pdb",
    "sha256": "2da23e028fef992f097ad06d5899caba30826fbf7cfde22d2fd2862cd790f07e",
    "status": "pass"
   },
   {
    "path": "research/structures/nnc2215-open-model.pdb",
    "sha256": "44c29d45b28ace4ede73a75a8e076dbca62e14b34bd3938a4b495ebd1270267a",
    "status": "pass"
   },
   {
    "path": "research/structures/nnc2215-open-source-corrected-candidate.pdb",
    "sha256": "2ee2d8cb8479c1a881704725c13462a84134b6f47313fe2d78d5f8382decdccc",
    "status": "pass"
   },
   {
    "path": "research/data/nnc2215-carbon-reconciliation-candidate.json",
    "sha256": "7aed13e3d8bcd13d9aa8b3e468f8831b5dec322caf3de454dd67f68087d4e133",
    "status": "observed"
   },
   {
    "path": "research/data/nnc2215-b1-topology-audit.json",
    "sha256": "4ee0feac680641f60b465f343837923488877bf04ea03e927f62efad707e79ce",
    "status": "observed"
   },
   {
    "path": "research/data/nnc2215-b29-topology-audit.json",
    "sha256": "edd4d9911170e3688c80f6b8ca3f4339ebee7815c1bb596cfa2dfaca468d96c6",
    "status": "observed"
   },
   {
    "path": "research/data/nnc2215-attachment-boundary-audit.json",
    "sha256": "0003fde2504cf31bb6513d4dd3f7db4834a7493910836bedd00cf769d7959349",
    "status": "observed"
   },
   {
    "path": "research/data/nnc2215-physiological-charge-states.json",
    "sha256": "1e29676bf7fb08f5d33a7d28194664d66221748467c747ed2924fcf6dc2f3a64",
    "status": "observed"
   },
   {
    "path": "research/data/nnc2215-hybrid-feasibility.json",
    "sha256": "51bc4308aa7c6518abf372b0fdb87dee0ac4a46f54d7bf27946668897f31d65e",
    "status": "observed"
   }
  ]
 },
 "limits": [
  "Both coordinate candidates are model-built derivatives, not experimentally resolved NNC2215 structures.",
  "Sixteen exact B29 graph-to-coordinate mappings remain per state; the audit does not select or rank them.",
  "PDB adjacency and coordinates do not independently establish bond orders, stereochemistry, protonation, or hydrogen ownership.",
  "The geometry intervals are broad heuristic screens, not evidence of bond order or mapping validity.",
  "No complete force field, OpenMM target system, target MD, affinity result, or clinical conclusion is established."
 ],
 "mapping_record_layout": {
  "bond_distance_observations_angstrom": "Aligns by list position with source_bonds, which preserves the full graph's bond-array order; each value is in angstroms.",
  "pdb_serial_by_graph_atom_index": "Aligns with graph_atoms ordered by graph_atom_index_zero_based; look up serial in that state's coordinate_atoms for PDB identity and XYZ."
 },
 "schema": "dia-health-one.nnc2215-full-coordinate-mapping.v2",
 "scope": "heavy-atom graph-to-coordinate mapping ledger for model-built candidates",
 "script": "research/audit_nnc2215_full_coordinate_mapping.py",
 "script_sha256": "b82d81fcb0ab9ad89242d5d4994db5eb30cfa3fff38fca9687d8e689ce52193f",
 "source_bonds": [
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    1.29,
    1.72
   ],
   "edge_id": "bond_0001",
   "element_pair": [
    "N",
    "C"
   ],
   "geometry_screen_applicable": true,
   "geometry_screen_status": "heuristic_screen",
   "graph_node_ids": [
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    "atom_0002"
   ],
   "source_bond_order": 1.0,
   "source_bond_type": "SINGLE"
  },
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    1.77
   ],
   "edge_id": "bond_0002",
   "element_pair": [
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   ],
   "geometry_screen_applicable": true,
   "geometry_screen_status": "heuristic_screen",
   "graph_node_ids": [
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   "source_bond_order": 1.0,
   "source_bond_type": "SINGLE"
  },
  {
   "broad_heuristic_interval_angstrom": [
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   ],
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   "element_pair": [
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   ],
   "geometry_screen_applicable": true,
   "geometry_screen_status": "heuristic_screen",
   "graph_node_ids": [
    "atom_0003",
    "atom_0004"
   ],
   "source_bond_order": 2.0,
   "source_bond_type": "DOUBLE"
  },
  {
   "broad_heuristic_interval_angstrom": [
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   ],
   "edge_id": "bond_0004",
   "element_pair": [
    "N",
    "C"
   ],
   "geometry_screen_applicable": true,
   "geometry_screen_status": "heuristic_screen",
   "graph_node_ids": [
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    "atom_0006"
   ],
   "source_bond_order": 1.0,
   "source_bond_type": "SINGLE"
  },
  {
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   ],
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   "element_pair": [
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   ],
   "geometry_screen_applicable": true,
   "geometry_screen_status": "heuristic_screen",
   "graph_node_ids": [
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   "source_bond_order": 1.0,
   "source_bond_type": "SINGLE"
  },
  {
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   ],
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   "element_pair": [
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   "geometry_screen_applicable": true,
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   ],
   "source_bond_order": 2.0,
   "source_bond_type": "DOUBLE"
  },
  {
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   ],
   "edge_id": "bond_0007",
   "element_pair": [
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   ],
   "geometry_screen_applicable": true,
   "geometry_screen_status": "heuristic_screen",
   "graph_node_ids": [
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    "atom_0009"
   ],
   "source_bond_order": 1.0,
   "source_bond_type": "SINGLE"
  },
  {
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   ],
   "edge_id": "bond_0008",
   "element_pair": [
    "C",
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   ],
   "geometry_screen_applicable": true,
   "geometry_screen_status": "heuristic_screen",
   "graph_node_ids": [
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   "source_bond_order": 1.0,
   "source_bond_type": "SINGLE"
  },
  {
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   "edge_id": "bond_0009",
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  },
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   "geometry_screen_applicable": true,
   "geometry_screen_status": "heuristic_screen",
   "graph_node_ids": [
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    "atom_0012"
   ],
   "source_bond_order": 1.0,
   "source_bond_type": "SINGLE"
  },
  {
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   "edge_id": "bond_0011",
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   ],
   "geometry_screen_applicable": true,
   "geometry_screen_status": "heuristic_screen",
   "graph_node_ids": [
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  {
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   "source_bond_order": 1.0,
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  },
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   "geometry_screen_applicable": true,
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   "source_bond_order": 2.0,
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  },
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   "edge_id": "bond_0017",
   "element_pair": [
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   "geometry_screen_applicable": true,
   "geometry_screen_status": "heuristic_screen",
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   "source_bond_order": 1.0,
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  },
  {
   "broad_heuristic_interval_angstrom": [
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      87,
      88,
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      90,
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      101,
      103,
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      128,
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      141,
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      143,
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      151,
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      162,
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      165,
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      167,
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      183,
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      192,
      202,
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      205,
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      207,
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      210,
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      219,
      220,
      221,
      222,
      223,
      224,
      225,
      226,
      238,
      239,
      240,
      241,
      242,
      243,
      244,
      245,
      246,
      253,
      254,
      255,
      256,
      257,
      258,
      260,
      259,
      267,
      268,
      269,
      270,
      271,
      272,
      273,
      274,
      275,
      276,
      277,
      278,
      288,
      289,
      290,
      291,
      292,
      293,
      298,
      299,
      300,
      301,
      302,
      303,
      305,
      304,
      306,
      351,
      352,
      353,
      354,
      355,
      356,
      358,
      357,
      360,
      359,
      361,
      370,
      371,
      372,
      373,
      374,
      375,
      376,
      386,
      387,
      388,
      389,
      390,
      391,
      393,
      392,
      400,
      401,
      402,
      403,
      404,
      405,
      406,
      408,
      407,
      417,
      418,
      419,
      420,
      421,
      422,
      424,
      423,
      425,
      426,
      434,
      435,
      436,
      437,
      438,
      439,
      440,
      441,
      453,
      454,
      455,
      456,
      457,
      458,
      463,
      464,
      465,
      466,
      470,
      471,
      472,
      473,
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      475,
      481,
      482,
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      488,
      487,
      489,
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      499,
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      501,
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      506,
      518,
      519,
      520,
      521,
      522,
      523,
      524,
      534,
      535,
      536,
      537,
      538,
      539,
      540,
      541,
      542,
      549,
      550,
      551,
      552,
      553,
      559,
      560,
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      562,
      563,
      564,
      565,
      566,
      578,
      579,
      580,
      581,
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      585,
      586,
      587,
      588,
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      599,
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      601,
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      605,
      606,
      618,
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      634,
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      651,
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      738,
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      764,
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      772,
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      774,
      775,
      776,
      777,
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      786,
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      790,
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      793,
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      316,
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      317,
      318,
      331,
      314,
      315,
      320,
      321,
      326,
      322,
      327,
      323,
      328,
      324,
      329,
      330,
      325,
      896,
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      899,
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      837,
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      862,
      817,
      816,
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      810,
      809,
      814,
      821,
      820,
      813,
      819,
      812,
      818,
      815,
      903,
      904,
      859,
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      861,
      833,
      881,
      878,
      884,
      850,
      855,
      856,
      857,
      852,
      853,
      869,
      907,
      871,
      854,
      851,
      887,
      893,
      890,
      832,
      875,
      880,
      877,
      883,
      834,
      844,
      846,
      848,
      838,
      840,
      909,
      911,
      910,
      842,
      836,
      886,
      892,
      889,
      873
     ]
    }
   ],
   "protein_template_atom_count": 398,
   "state": "inactive_closed"
  }
 ],
 "status": "coordinate_mapping_coverage_passed"
}
